CDS

Accession Number TCMCG017C34046
gbkey CDS
Protein Id OMO52998.1
Location join(52037..52399,53491..53524,54469..54644,54835..54871,55118..55163,55246..55330,55688..55747,56578..56758,57524..57720,58262..58336,58914..59024,59555..59620,59707..59805,60574..60795,61026..61181,61282..61371,61816..62127,62217..62401,62471..62573,62688..62833,63062..63141,63274..63449,63587..63724)
GeneID InterPro:IPR000330
Organism Corchorus olitorius
locus_tag COLO4_36884

Protein

Length 1045aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01023697.1
Definition SNF2-related protein [Corchorus olitorius]
Locus_tag COLO4_36884

EGGNOG-MAPPER Annotation

COG_category B
Description DNA annealing helicase and endonuclease
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K14440        [VIEW IN KEGG]
EC 3.6.4.12        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000018        [VIEW IN EMBL-EBI]
GO:0000228        [VIEW IN EMBL-EBI]
GO:0000733        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004519        [VIEW IN EMBL-EBI]
GO:0004520        [VIEW IN EMBL-EBI]
GO:0004536        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005657        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006260        [VIEW IN EMBL-EBI]
GO:0006261        [VIEW IN EMBL-EBI]
GO:0006275        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008156        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009411        [VIEW IN EMBL-EBI]
GO:0009416        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0031297        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031593        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032392        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0036292        [VIEW IN EMBL-EBI]
GO:0036310        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043596        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044454        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045005        [VIEW IN EMBL-EBI]
GO:0045910        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048478        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051052        [VIEW IN EMBL-EBI]
GO:0051053        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070530        [VIEW IN EMBL-EBI]
GO:0071103        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090329        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0097617        [VIEW IN EMBL-EBI]
GO:0140030        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:2000104        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAGCTCACAGATGAACAAAGAAAACAAGCAGAAGCAAACCGGTTAGCCGCAATTGCAAAGCGAAAAGCCTTAATTGAATCCTCGACCGCTACAGTTAACAGTCACTATCAACAAAACCAAGCTCACTATTGGAGACTCACCAAGTGCCCTAAGCTCTCCAACCATAACACCCATATCCCACAACGGCCTCAAGCATCGAATTTGGACCCGGTTTCGAGTACCCAATTGTCTAAAAAGTTCCAGGTCAGGCTCGAAATTTGCTCTCCTGACTCCTTTGCGGTCACCCCAGAGACGCTGGAGGGGTATGTCTACCAGGGTGATGAAGAGTGCTTTCGAAGATTGGAGCATATTTTATCCGATGCAATTGCTATTGCTGGTTGTTTCCGGAATGAAGTTTTTGGTCATCGGGACAATCCTGCCAACTTAAAAAAGTCCCCTAAAGTTGTGGTTATTTCCTTTACAATGCTTAATCGCTTGCGGAAGATAATGCTTGAGCAAGAATGGGCTGTCTTAGTAGTTGATGAATCCCACCATCTACGATGTTCACGAAAGGCATCAGAATCAGGGGAGATAAAAACTGTTCTTGATTTGGCGGAGAAGGTCAAGCGGGTTAATAGGCCGTATGACATTTTTCACCAGATTAATATGTTGTGGCCTGGTTTGTTGGGAGAGACTAAGTATAAGTTTGCAGAAACTTACTGCGCTGTCAACTTTTCCCAGAGTTCTCAAGGCTTTAAGGATTTCTCAAAGGGTGTTCGCTTGGAGGAGTTGCATTTGTTACTTAGCCAAACCGTTATGATAAGACGTCTGAAGGAGCATGTGATGGTCCAGTTGCCACCCAAACGTCGGCAAGTTATAAGGTTGCAGTTGAAGAAATCGGATATAGCTTCAGCCAAAGCAGCTATCAGTTTGTCCAATGGTGACGCTTTTGATAATAATGCTGCCAAAGATGCTTCAGAGAACCTTGAAGAAAATCATGATGGTGAAAGCTACTGTAATTCTGGAGAACTCTCTTATCAAGAACTTGGTGTTGCAAAGCTTCGTGGATTTCGTGAATGGTTTTCCATTCACCCACTAATTGCAGAGTCAGATGCTGTGGAAGAAGTGGATACAAACTCCAGTTCTCATAAAATGATAATTTTTGCCCATCATCATAAAGTTCTTGATGGAATACAGGAGTTCATATGTGAGAAAGGGATTGGTTTTGTCCGTATTGATGGAACTACGCTTCCAAAAGACCGACAGTCAGCTGTCAAAATTGCAATAATTGGTATAACTGCGGGAGGTGTTGGACTGGATTTTTCATCGGCACAAAATGTTGTGTTCTTGGAGATCCCTCAGTCGCCATCATTGATGCTCCAGGCCGAGGATAGGGCTCACAGACGAGGGCAGACAAATGCGGTCAACATTTACATCTTCTGTGCAAAGGATACTTTGGATGAGTCAAATTGGCAAGCTCTAAACAGGAGTTTGCACCGTGTTTCATCTACAACAAATGGAAAATATGATGCAGTGCAGGGGATAGAAGTTGAAGGCATTTCTTATCTAGTAACCCCTGATGGAAATTGCAAACGTAAAATGTTGAGGATAGAAGCACCTAGCAAATTTTCACTGGGTTTAGAGAAGTCGCAAGACCCTGAATCTTTTCCGGATAAGCAGCCTTTAGAAGGATCTGCTGATAAAGCTGTCTCCATGGAAGATGTATCTGACGGAAAAAATCAAACTGGTGGCAGCTACCTTCATAATGATGACATTATAGTTTCCAATATACAAATAAATGAAGAATTTGTTTCCTTGGGAAACAAAAATGAATTACATCATTCTGCAGCTGATACTGGAATCTGTGACATGGCCCCTGATTTTTCAATGGATGAGAGAAGTGAATATCATGATCCGCTGCCAAAGGTGCAATCAATCAAGGCAGATGATGATGCACCAATTCAACTATTAGAACCTGAATGTTTCTCTAATGATGTAGATTCTCTGCGATTTGAGGTAAGTCAATATACTGGAAGAATCCACCTGTATTCCTGCATCCCAGGGACAGATTTAAGACCAAGGCCACTTTTTGAGAATTTTCGACCAGAGGAAATTGATACAGAAGATGGTCTTGTAACTGATAAAGAAGAAACTGTTTCCAAAAATTTTAAGGACAAGCCAGCCTATAGGCATGCTCTTCGGGCCTTCATTAATGAATGGAATAAACTAAGACCCATTGAACAAAGAAAATTACGTGGAAAGCCTTTGCAACTCCCTTTATCCATTGAGTTATGCTACTTGAAGGAAAGCGTTAACCATGATAGTGTGGGACTGCTGAAAGGCGGTAGTAAACGGCGTACTACACCTTTGTGTGAGATAAGCATTTCTTTACCTCCAAATGCTGTGTGGAAAAAGGTCCATCTACAAAAGAGTTATAGTAAAAAGGAGAAAGAGTATACTCAGGGGTGGCTGAATGATGAACCACTCTGTAAACTCTGCCAAAATCCATGCAAGGGGGGAAGTGCCAAGATGCCTGAATATTTTGAGGATCTTTTCTGTAAAATTGGCTGCTATGAGGAATACCGCCTAAGAACTAGCAATAGATTCCTCCGCCAGGAACTATTTCAAATTGAGCATGGCGTCTGCACAAATTGCCAATTAGACTGCCATCAACTTGTGAAGCACTTAAAACCCTTATCTTCAGCAAGGCGGCAGGAGTATATTGCAAAAGTAGCCCCGAAGATTGCGAGTCAGAAGAGCTTGTACGAAAAGCTTGTCAGCGATCCTTCTGAGGGCAATGCATGGCATGCAGATCACATTGTCCCCGTTTACAGAGGGGGAGGTGAATGCAGACTAGAGAATATGAGGACTCTTTGTGTGGCCTGTCATGCTGACGTTACTGCAGCACAATGTGCTGAACGACGCTTAATGAGGATCAAAGCAAAGAACAAACTTAAATCCGTCTTGAATGAACTCAGAAATTCTGAGAATACAGAAATGAATGCTCCTTGCAGAAAGGATCAAGGACCCTCGGAGATTATAGACGACATAGCTATGGATGAACTTCTGGTGACTGTTCCTGGAAGTGCCTATTCTGGAGGCGAAAGCAGCATCCCTCAAACTGAGGAATTAAACGATTCCCCGGAATTCGAATGA
Protein:  
MELTDEQRKQAEANRLAAIAKRKALIESSTATVNSHYQQNQAHYWRLTKCPKLSNHNTHIPQRPQASNLDPVSSTQLSKKFQVRLEICSPDSFAVTPETLEGYVYQGDEECFRRLEHILSDAIAIAGCFRNEVFGHRDNPANLKKSPKVVVISFTMLNRLRKIMLEQEWAVLVVDESHHLRCSRKASESGEIKTVLDLAEKVKRVNRPYDIFHQINMLWPGLLGETKYKFAETYCAVNFSQSSQGFKDFSKGVRLEELHLLLSQTVMIRRLKEHVMVQLPPKRRQVIRLQLKKSDIASAKAAISLSNGDAFDNNAAKDASENLEENHDGESYCNSGELSYQELGVAKLRGFREWFSIHPLIAESDAVEEVDTNSSSHKMIIFAHHHKVLDGIQEFICEKGIGFVRIDGTTLPKDRQSAVKIAIIGITAGGVGLDFSSAQNVVFLEIPQSPSLMLQAEDRAHRRGQTNAVNIYIFCAKDTLDESNWQALNRSLHRVSSTTNGKYDAVQGIEVEGISYLVTPDGNCKRKMLRIEAPSKFSLGLEKSQDPESFPDKQPLEGSADKAVSMEDVSDGKNQTGGSYLHNDDIIVSNIQINEEFVSLGNKNELHHSAADTGICDMAPDFSMDERSEYHDPLPKVQSIKADDDAPIQLLEPECFSNDVDSLRFEVSQYTGRIHLYSCIPGTDLRPRPLFENFRPEEIDTEDGLVTDKEETVSKNFKDKPAYRHALRAFINEWNKLRPIEQRKLRGKPLQLPLSIELCYLKESVNHDSVGLLKGGSKRRTTPLCEISISLPPNAVWKKVHLQKSYSKKEKEYTQGWLNDEPLCKLCQNPCKGGSAKMPEYFEDLFCKIGCYEEYRLRTSNRFLRQELFQIEHGVCTNCQLDCHQLVKHLKPLSSARRQEYIAKVAPKIASQKSLYEKLVSDPSEGNAWHADHIVPVYRGGGECRLENMRTLCVACHADVTAAQCAERRLMRIKAKNKLKSVLNELRNSENTEMNAPCRKDQGPSEIIDDIAMDELLVTVPGSAYSGGESSIPQTEELNDSPEFE